Wednesday, November 30, 2011

Current Event

Developments in science are extremely important to the advancement of our global society.  Read the following articles and give any pros and/or cons you see from this advancement in chemistry.


New Technique Puts Chemistry Breakthroughs On the Fast Track

Scientists can now take that "a-ha" moment to go with a method Princeton University researchers developed -- and successfully tested -- to speed up the chances of an unexpected yet groundbreaking chemical discovery. (Credit: © Olivier / Fotolia)
ScienceDaily (Nov. 28, 2011) — Scientists can now take that "a-ha" moment to go with a method Princeton University researchers developed -- and successfully tested -- to speed up the chances of an unexpected yet groundbreaking chemical discovery.
The researchers report this month in the journal Science a technique to accomplish "accelerated serendipity" by using robotics to perform more than 1,000 chemical reactions a day with molecules never before combined. In a single day of trials, the Princeton researchers discovered a shortcut for producing pharmaceutical-like compounds that shaves weeks off the traditional process, the researchers report.
The basis of the research was to combine new technology with a unique, rapid-reaction approach that could allow chemists to explore unheard-of and potentially important chemical combinations without devoting years to the pursuit, explained senior researcher and co-author David MacMillan, the James S. McDonnell Distinguished University Professor of Chemistry at Princeton and chair of the department. MacMillan worked with lead author Andrew McNally, a research associate in MacMillan's lab, and Princeton graduate student and co-author Christopher Prier.
"This is a very different way of approaching how we come up with valuable chemical reactions," MacMillan said.
"Our process is designed specifically for serendipity to occur. The molecules that should be combined are those for which the result is unknown," he said. "In our lab, we used this technique to make new findings in a much more routine and rapid fashion, and we show that if you have enough events involved, serendipity won't be rare. In fact, you can enable it to happen on almost a daily basis."
The MacMillan lab's technique does more than just expedite the discovery process -- the researchers actually developed a unique framework for creating new materials or finding better ways of producing existing ones, said Stephen Buchwald, a professor of chemistry at the Massachusetts Institute of Technology.
"This is a particularly brilliant approach," said Buchwald, who is familiar with the work but had no role in it.
"Usually, one takes molecules that one thinks will react and tries to figure out the best way to achieve that reaction," he said. "This team took molecules for which there was no obvious reaction between them and looked for 'accidental' reactivity. This approach could be useful for any field that requires new types of matter or a more efficient means of synthesizing known compounds."
Illustrating that principle, the Princeton researchers combined two molecules with no history of reacting to generate the type of chemical functionality found in eight of the world's top 100 pharmaceuticals, MacMillan said. The reaction involved a nitrogen-based molecule known as an amine that has a hydrogen and carbon pair, and a circle of atoms stabilized by their bonds known as an aromatic ring.
The result was a carbon-nitrogen molecule with an aromatic ring, a building block of many amine-based pharmaceuticals, explained MacMillan. This class of drugs mimics natural amine molecules in the body and includes medications such as antihistamines, decongestants and antidepressants. In drug development, chemists "tweak" organic molecules to enhance their ability to bind with and disrupt enzymes in a biological system, which is how pharmaceuticals basically operate, MacMillan said. A molecule with an aromatic ring has increased reactivity and makes the tweaking process much easier, he said, but attaching the aromatic ring is a process in itself that typically involves two to three weeks of successive chemical reactions.
The reaction MacMillan and his team found provides a quick way around that.
"We quickly realized that any pharmaceutical research chemist could immediately take these very simple components and, via a reaction no one had known about, start assembling molecules with an adjacent aromatic ring rapidly," MacMillan said.
"Instead of having to construct these important molecules circuitously using lots of different chemistry over a period of days if not weeks, we can now do it immediately in the space of one chemical reaction in one day."
Buchwald said that the rapid production of this molecule is as surprising as it is significant.
"The way these types of molecules -- alpha aryl amines -- were produced in this project is highly efficient, and no person could truthfully say that they would have predicted this reaction," Buchwald said. "This group was able to take a reaction that no one knew was possible and make it practical and useful in a very short time. This really speaks to the power of their overall method."
MacMillan conceived of accelerated serendipity after reflecting on his doctoral work at the University of California-Irvine during the 1990s. His work there hinged on two unforeseen yet important reactions that occurred in the span of six years, he said. When envisioning the project reported in Science, MacMillan calculated that if, in a single day, he ran the equivalent of one reaction per day for three years -- nearly 1,100 reactions -- the odds favored a new discovery, he said.
The Princeton team began running reactions once a day using a high-throughput, automated reaction accelerator in Princeton's Merck Center for Catalysis, combining on a one-to-one ratio molecules with no reported affect on each other.
Central to the process is a technique developed in MacMillan's lab and reported in Science in 2008 to synthesize chemical reactions using a low-power light source, such as a household light bulb. Known as photoredox catalysis, the reaction takes place when inorganic catalysts absorb light particles from the light source then pass an electron onto the organic molecules, which creates, or synthesizes, a new compound.
For the latest work, MacMillan and his team carried out this process on the molecules before each reaction cycle. Because the use of photoredox catalysts in organic-compound synthesis is relatively new -- it has been typically used by chemists and in industry for processes such as energy storage and hydrogen production -- it has not been as thoroughly explored as the more common method of using catalysts derived from metals such as nickel, gold and copper, MacMillan said. Thus, he said, elements with no history of reacting with each other could possibly produce results under this different approach.
"If one wanted to find new reactions, it would have to be done in a completely new area of chemistry research where the chances of finding something completely unknown are probably higher than continuing in an area that has been studied for the past 50 years," MacMillan said.
The Princeton researchers produced numerous new reactions, but "new" does not necessarily equal interesting or important, MacMillan said. They analyzed and experimented with each new reaction for its potential application, a process that revealed the nitrogen-carbon molecule with the aromatic ring.
An important feature of the Princeton researchers' molecule -- like any important discovery -- is that its application extends beyond the material itself, MacMillan said. He and his colleagues have begun mining the very process that created the molecule for indications that other novel reactions can be brought about.
"If we found this was one really valuable reaction, we wondered what others exist that we just don't know about," MacMillan said.
"Another very valuable aspect of the molecule we created is that once we understood how it happened, it set us up to design other completely new reactions based upon our understanding of what happened initially," he said. "Now, we're applying similar techniques broadly, finding new reactions continually and determining which ones are important.
"To us that really proved the point of why you want serendipitous findings," MacMillan said. "They present new knowledge, and based upon that new knowledge you can invent."

The research was published Nov. 25 in Science and was supported by a grant from the National Institutes of Health, and gifts from Merck, Amgen, Abbott and Bristol-Myers Squibb.

Thursday, November 10, 2011

How does this apply to me?

The application of what we are doing can sometimes seem so difficult to figure out.  Relate this class to what your plans are.
Answer the following two questions:
How does chemistry apply to your 5 year goal?  If not, what ways does taking chemistry benefit you?


Tuesday, October 25, 2011

Where will you be?

One major obstacle impeding ones chance of success is short sightedness.  A high school teacher I used to know said that he got out of teaching because he was tired of students "not looking past the end of their nose."

Where will you be in 5 years??  What college will you choose?  What factors influenced these choices?

Post by 7am Monday (10/31) morning for full Credit. 

Be Honest, Be willing to share, Be willing to take a risk.

Thursday, October 13, 2011

Twitter

Follow Mr_Patin on Twitter to get regular Assignment updates.

Tuesday, October 4, 2011

What do Chemists do?

Chemistry is everywhere, and constantly being used to develop new technology.  Read the article posted below and discuss where this would be useful?

Don't just post the obvious.  Use deep intellectual thought.  Go beyond the surface.

You must make one observation and respond to one other post.  If you are the first to post, you only need to make one observation and ask question for your classmates to respond to.







Self-Cleaning Cotton Breaks Down Pesticides, Bacteria

ScienceDaily (Sep. 29, 2011) — UC Davis scientists have developed a self-cleaning cotton fabric that can kill bacteria and break down toxic chemicals such as pesticide residues when exposed to light.
"The new fabric has potential applications in biological and chemical protective clothing for health care, food processing and farmworkers, as well as military personnel," said Ning Liu, who conducted the work as a doctoral student in Professor Gang Sun's group in the UC Davis Division of Textiles of Clothing.
A paper describing the work was published Sept. 1 in the Journal of Materials Chemistry.
Liu developed a method to incorporate a compound known as 2-anthraquinone carboxylic acid, or 2-AQC, into cotton fabrics. This chemical bonds strongly to the cellulose in cotton, making it difficult to wash off, unlike current self-cleaning agents. Unlike some other experimental agents that have been applied to cotton, it does not affect the properties of the fabric.
When exposed to light, 2-AQC produces so-called reactive oxygen species, such as hydroxyl radicals and hydrogen peroxide, which kill bacteria and break down organic compounds such as pesticides and other toxins.
Although 2-AQC is more expensive than other compounds, the researchers say that cheaper equivalents are available.
The work was funded by the National Science Foundation, the U.S. Defense Threat Reduction Agency and the Jastro Shields Graduate Research Fellowship from the UC Davis College of Agricultural and Environmental Sciences.


http://www.sciencedaily.com/releases/2011/09/110928110021.htm

Tuesday, September 27, 2011

Be the Change You Want to See in the World. -- Mahatma Ghandi

From your comments many of you want the same thing.  You can make that change.  Make that change in your own lives, and put a stop to those doing it here.  You're probably thinking "C'mon, Patin I'm going to be the one telling people to stop be negative towards others or Kelloggsville, yeah right!".  Someone has to have the courage to change the atmosphere around here.  Everyone here wants to be successful.  Some people want to but don't know how, some can't because of social pressures, while others are successful.  Make the Change.

Go to sporting Events and be involved.  Pride is contagious, kindness is contagious, and most importantly attitude is Contagious.

BE COURAGEOUS --  Everyone has it, but only a few show it.

Questions and/or Comments?

Current Chem I Problems Assigned:  Ch. 2 1-23.

Thursday, September 22, 2011

Your K-ville Experience

If you could change one thing about KHS what would it be?  (Imagine the perfect environment-high school experience- what would it be?)
**  Do not mention people, rules, or classes you don't like or agree with, stick to the general atmosphere.
2pts Extra Credit on the Lab Equipment Quiz to all who respond to the question by Monday Night!!

I am updating this post, because the current posts do not reflect comments on the general SCHOOL atmosphere. Complaining about passing time, starting and ending dates was not the intent of the post. Think in terms of student body, treatment of one another, participation, school pride, etc... Those of you who already posted try again.

Wednesday, September 21, 2011

So Far . . .

So far the comments have been great and I appreciate your open and honest feedback.  From what I've read thus far many of you are excited, some of you are concerned, and some of you have already identified yourself as not meeting the expectations you set for yourself.  Never underestimate yourself (or anyone else for that matter), you never know what a person is capable of until they are presented with a challege.

DON'T FORGET CHAPTER 1 TEST TOMORROW, LAB TEST FRIDAY!!

Sunday, September 18, 2011

Impressions

We are officially two weeks in.  What are your impressions of the year so far?  What are your impressions of the class?  Have expectations changed?  I'm going to pose questions on this blog that I genuinely want you to think about and answer.  Some of you will imagine that you are too cool to answer the questions.  Notice I used the word 'imagine', because 95% of the persona you try to achieve is in your head.  Most people find that the only people who they truly think of as 'cool' are those who have money/fame/success in their lives.  I guarantee you they didn't get there by trying to fit into a certain persona, they got there by working hard, being focused, and being unafraid to venture outside the box.  Even if stepping out of the box meant being on their own and making the 'right' (but not popular) decisions, they still stepped out.  Take a risk, be intellectual, be involved, participate, and most of all share your responses.  Success is yours for the taking, but you have to be willing to pursue, no matter the social pressures.

Thursday, September 15, 2011

Welcome!!

Welcome to The Chemistry I Blog!  Current Assignments, Online Assignments, Daily Thoughts or Instruction, Question and Answer segments, and other things K-ville will be hosted here regularly.  Keep up, hopefully comments and posts will go quickly.